Conferences in DBLP
Marvin Frazier , David Thomassen , Aristides Patrinos , Gary Johnson , Carl Edward Oliver , Edward C. Uberbacher Stepping Up the Pace of Discovery: the Genomes to Life Program. [Citation Graph (0, 0)][DBLP ] Conf ] Richard M. Karp The Role of Algorithmic Research in Computational Genomics. [Citation Graph (0, 0)][DBLP ] Conf ] Philip E. Bourne High Performance Computational Biology - Past Progress and Future Promise. [Citation Graph (0, 0)][DBLP ] Conf ] Jehoshua Bruck Bridging Paradigm Gaps Between Biology and Engineering. [Citation Graph (0, 0)][DBLP ] Conf ] Jean-Michel Claverie Microbial Functional Genomics: Pulling Together a Variety of Approaches and Concepts. [Citation Graph (0, 0)][DBLP ] Conf ] Eric H. Davidson The Sea Urchin Endomesoderm Gene Regulatory Network, an Encoded Logic Map for Early Development. [Citation Graph (0, 0)][DBLP ] Conf ] Liliana Florea , Bjarni V. Halldórsson , Oliver Kohlbacher , Russell Schwartz , Stephen Hoffman , Sorin Istrail Epitope Prediction Algorithms for Peptide based Vaccine Design. [Citation Graph (0, 0)][DBLP ] Conf ] Peter D. Karp Pathway Bioinformatics. [Citation Graph (0, 0)][DBLP ] Conf ] Jun Liu BPPS: An Algorithm for Analyzing Protein Sequence Alignments. [Citation Graph (0, 0)][DBLP ] Conf ] Michael S. Waterman , Yu Zhang Eulerian Path Methods for Multiple Sequence Alignment. [Citation Graph (0, 0)][DBLP ] Conf ] Stephen Wong Integrating Bioinformatics Advances into Disease Management Systems to Improve Quality of Care. [Citation Graph (0, 0)][DBLP ] Conf ] Edward C. Uberbacher , David Thomassen , Aristides Patrinos , Gary Johnson , Carl Edward Oliver , Marvin Frazier Computing for the DOE Genomes to Life Program. [Citation Graph (0, 0)][DBLP ] Conf ] Adam P. Arkin Motifs and Modules in Cellular Signal Processing: Applications to Microbial Stress Response Pathways. [Citation Graph (0, 0)][DBLP ] Conf ] Grant Heffelfinger An Overview of the Sandia National Laboratories Genomes to Life Project, "Carbon Sequestration in Synechococcus Sp.: From Molecular Machines to Hierarchical Modeling". [Citation Graph (0, 0)][DBLP ] Conf ] Derek Lovley Analysis of the Genetic Potential and Gene Expression of Microbial Communities Involved in the In Situ Bioremediation of Uranium and Harvesting ElectricalEnergy from Organic Matter. [Citation Graph (0, 0)][DBLP ] Conf ] Andres Figueroa , James Borneman , Tao Jiang Clustering Binary Fingerprint Vectors with Missing Values for DNA Array Data Analysis. [Citation Graph (0, 0)][DBLP ] Conf ] Tanveer Fathima Syeda-Mahmood Clustering Time-Varying Gene Expression Profiles using Scale-space Signals. [Citation Graph (0, 0)][DBLP ] Conf ] Sven Rahmann Fast and Sensitive Probe Selection for DNA Chips Using Jumps in Matching Statistics. [Citation Graph (0, 0)][DBLP ] Conf ] Wing-Kin Sung , Wah-Heng Lee Fast and Accurate Probe Selection Algorithm for Large Genomes. [Citation Graph (0, 0)][DBLP ] Conf ] Xintao Wei , David N. Kuhn , Giri Narasimhan Degenerate Primer Design via Clustering. [Citation Graph (0, 0)][DBLP ] Conf ] Alexander Schliep , David C. Torney , Sven Rahmann Group Testing With DNA Chips: Generating Designs and Decoding Experiments. [Citation Graph (0, 0)][DBLP ] Conf ] Nigam Shah , Jorge Lepre , Yuhai Tu , Gustavo Stolovitzky Can We Identify Cellular Pathways Implicated in Cancer Using Gene Expression Data? [Citation Graph (0, 0)][DBLP ] Conf ] Seiya Imoto , Tomoyuki Higuchi , Takao Goto , Kousuke Tashiro , Satoru Kuhara , Satoru Miyano Combining Microarrays and Biological Knowledge for Estimating Gene Networks via Bayesian Networks. [Citation Graph (0, 0)][DBLP ] Conf ] Simone Bentolila Two operative concepts for the post-genomic era: the "me'moire vive" of the cell and a molecular algebra. [Citation Graph (0, 0)][DBLP ] Conf ] Dennis L. Chao , Miles P. Davenport , Stephanie Forrest , Alan S. Perelson Stochastic Stage-structured Modeling of the Adaptive Immune System. [Citation Graph (0, 0)][DBLP ] Conf ] Shuo Liu , Steve Lin , Mark Woon , Teri E. Klein , Russ B. Altman A Personalized and Automated dbSNP Surveillance System. [Citation Graph (0, 0)][DBLP ] Conf ] Li Zhang , Aidong Zhang , Murali Ramanathan Fourier Harmonic Approach for Visualizing Temporal Patterns of Gene Expression Data. [Citation Graph (0, 0)][DBLP ] Conf ] Orhan Çamoglu , Tamer Kahveci , Ambuj K. Singh Towards Index-based Similarity Search for Protein Structure Databases. [Citation Graph (0, 0)][DBLP ] Conf ] Matthias Höchsmann , Thomas Töller , Robert Giegerich , Stefan Kurtz Local Similarity in RNA Secondary Structures. [Citation Graph (0, 0)][DBLP ] Conf ] Tolga Can , Yuan-Fang Wang CTSS: A Robust and Efficient Method for Protein Structure Alignment Based on Local Geometrical and Biological Feature. [Citation Graph (0, 0)][DBLP ] Conf ] Werner G. Krebs , Philip E. Bourne Statistical and Visual Morph Movie Analysis of Crystallographic Mutant Selection Bias in Protein Mutation Resource Data. [Citation Graph (0, 0)][DBLP ] Conf ] Shu-Yun Le , Jih-H. Chen , Jacob V. Maizel Statistical Inference for Well-ordered Structures in Nucleotide Sequences. [Citation Graph (0, 0)][DBLP ] Conf ] Xiang Wan , Dong Xu , Carolyn M. Slupsky , Guohui Lin Automated Protein NMR Resonance Assignments. [Citation Graph (0, 0)][DBLP ] Conf ] Christopher James Langmead , Bruce Randall Donald 3D Structural Homology Detection via Unassigned Residual Dipolar Couplings. [Citation Graph (0, 0)][DBLP ] Conf ] Hwanjo Yu , Jiong Yang , Wei Wang , Jiawei Han Discovering Compact and Highly Discriminative Features or Feature Combinations of Drug Activities Using Support Vector Machines. [Citation Graph (0, 0)][DBLP ] Conf ] Jake Yue Chen , Andrey Y. Sivachenko , Russell Bell , Cornelia Kurschner , Irene Ota , Sudhir Sahasrabudhe Initial Large-scale Exploration of Protein-protein Interactions in Human Brain. [Citation Graph (0, 0)][DBLP ] Conf ] Gong-Xin Yu , George Ostrouchov , Al Geist , Nagiza F. Samatova An SVM-based Algorithm for Identification of Photosynthesis-specific Genome Features. [Citation Graph (0, 0)][DBLP ] Conf ] Robert L. Grossman , Pavan Kasturi , Donald Hamelberg , Bing Liu Experimental Studies of the Universal Chemical Key (UCK)Algorithm on the NCI Database of Chemical Compounds. [Citation Graph (0, 0)][DBLP ] Conf ] Kazuhiro Seki , Javed Mostafa A Probabilistic Model for Identifying Protein Names and their Name Boundaries. [Citation Graph (0, 0)][DBLP ] Conf ] Shoudan Liang cWINNOWER Algorithm for Finding Fuzzy DNA Motifs. [Citation Graph (0, 0)][DBLP ] Conf ] Eric P. Xing , Wei Wu , Michael I. Jordan , Richard M. Karp LOGOS: a modular Bayesian model for de novo motif detection. [Citation Graph (0, 0)][DBLP ] Conf ] Mihaela Zavolan , Nicholas D. Socci , Nikolaus Rajewsky , Terry Gaasterland SMASHing regulatory sites in DNA by human. [Citation Graph (0, 0)][DBLP ] Conf ] G. Sampath A Block Coding Method that Leads to Significantly Lower Entropy Values for the Proteins and Coding Sections of Haemophilus influenzae. [Citation Graph (0, 0)][DBLP ] Conf ] Ravi Vijaya Satya , Amar Mukherjee , Udaykumar Ranga A Pattern Matching Algorithm for Codon Optimization and CpG Motif-Engineering in DNA Expression Vectors. [Citation Graph (0, 0)][DBLP ] Conf ] Russell Schwartz Haplotype Motifs: An Algorithmic Approach to Locating Evolutionarily Conserved Patterns in Haploid Sequences. [Citation Graph (0, 0)][DBLP ] Conf ] Tomoyuki Yamada , Shinichi Morishita Computing Highly Specific and Mismatch Tolerant Oligomers Efficiently. [Citation Graph (0, 0)][DBLP ] Conf ] Cinzia Di Pietro , V. Di Pietro , G. Emmanuele , Alfredo Ferro , T. Maugeri , E. Modica , Giuseppe Pigola , Alfredo Pulvirenti , Michele Purrello , Marco Ragusa , M. Scalia , Dennis Shasha , S. Travali , V. Zimmitti ANTICLUSTAL: Multiple Sequence Alignment by Antipole Clustering and Linear Approximate 1-Median Computation. [Citation Graph (0, 0)][DBLP ] Conf ] Francis Y. L. Chin , N. L. Ho , Tak Wah Lam , Prudence W. H. Wong , Mee Yee Chan Efficient Constrained Multiple Sequence Alignment with Performance Guarantee. [Citation Graph (0, 0)][DBLP ] Conf ] Kuen-Pin Wu , Hsin-Nan Lin , Ting-Yi Sung , Wen-Lian Hsu A New Similarity Measure among Protein Sequences. [Citation Graph (0, 0)][DBLP ] Conf ] Alexandre Tchourbanov , Daniel Quest , Hesham H. Ali , Mark Pauley , Robert Norgren A New Approach for Gene Annotation Using Unambiguous Sequence Joining. [Citation Graph (0, 0)][DBLP ] Conf ] Dan Gusfield , Satish Eddhu , Charles H. Langley Efficient Reconstruction of Phylogenetic Networks with Constrained Recombination. [Citation Graph (0, 0)][DBLP ] Conf ] Bailin Hao , Ji Qi Prokaryote Phylogeny without Sequence Alignment: From Avoidance Signature to Composition Distance. [Citation Graph (0, 0)][DBLP ] Conf ] Monica Chagoyen , M. Erdem Kurul , Pedro A. de Alarcón , Simone Santini , Bertram Ludäscher , José María Carazo , Amarnath Gupta A Semantic Mediation Approach for Problems in Computational Molecular Biology. [Citation Graph (0, 0)][DBLP ] Conf ] Barbara A. Eckman , Kerry Deutsch , Marta Janer , Zoé Lacroix , Louiqa Raschid A Query Language to Support Scientific Discovery. [Citation Graph (0, 0)][DBLP ] Conf ] Zhong-Hui Duan , Louis S. Liou , Ting Shi , Joseph A. DiDonato Application of Singular Value Decomposition and Functional Clustering to Analyzing Gene Expression Profiles of Renal Cell Carcinoma. [Citation Graph (0, 0)][DBLP ] Conf ] Xin Lu , Wen Zhang , Zhaohui S. Qin , Jun S. Liu Statistical Resynchronization and Detection of Periodic Transcripts. [Citation Graph (0, 0)][DBLP ] Conf ] George C. Tseng , Wing Hung Wong A Method for Tight Clustering: with Application to Microarray. [Citation Graph (0, 0)][DBLP ] Conf ] Richard J. Carter Riptide: Fast Protein Identification from Mass Spectrometer Data. [Citation Graph (0, 0)][DBLP ] Conf ] James H. Graham , C. David Page Jr. , Ahmed H. Kamal Accelerating the Drug Design Process through Parallel Inductive Logic Programming Data Mining. [Citation Graph (0, 0)][DBLP ] Conf ] Mingzhou Song , Stephane Boissinot , Robert M. Haralick , Ihsin T. Phillips Estimating Recombination Rate Distribution by Optimal Quantization. [Citation Graph (0, 0)][DBLP ] Conf ] Jane Fridlyand , Antoine Snijders , Dan Pinkel , Donna Albertson , Ajay N. Jain Statistical issues in the analysis of the array CGH data. [Citation Graph (0, 0)][DBLP ] Conf ] M. Duncan , K. Fung , H. Wang , C. Yen , K. Cios Identification of Contaminants in Proteomics Mass Spectrometry Data. [Citation Graph (0, 0)][DBLP ] Conf ] Stephen Osborn , Scot Kennedy , Daniel Chin A Flexible Pipeline for Experimental Design, Processing, and Analysis of Microarray Data. [Citation Graph (0, 0)][DBLP ] Conf ] Xutao Deng , Hesham H. Ali A Computational Approach to Reconstructing Gene Regulatory Networks. [Citation Graph (0, 0)][DBLP ] Conf ] Tema Fridman , Robert Day , Jane Razumovsbya , Dong Xu , Andrey Gorin Probability Profiles - Novel Approach in Tandem Mass Spectrometry De Novo Sequencing. [Citation Graph (0, 0)][DBLP ] Conf ] Eric G. Stephan , George Chin Jr. , Kyle R. Klicker , Abigail L. Corrigan , Heidi J. Sofia A Symbolic Logic Strategy For Mapping Biological Concepts in the HERBE Prototype. [Citation Graph (0, 0)][DBLP ] Conf ] Jane Razumovskaya , Victor Olman , Dong Xu , Edward C. Uberbacher , Nathan Verberkmoes , Ying Xu A Computational Method for Assessing Peptide-Identification Reliability in Tandem Mass Spectrometry Analysis with SEQUEST. [Citation Graph (0, 0)][DBLP ] Conf ] Zhangjun Fei , Xuemei Tang , Rob Alba , Paxton Payton , James Giovannoni Tomato Expression Database (TED) - An Interactive Management Tool for Tomato Expression Profiling Data. [Citation Graph (0, 0)][DBLP ] Conf ] Harpreet Kaur Gill Oncogenetics Tree Models - An Estimation. [Citation Graph (0, 0)][DBLP ] Conf ] Marilyn Safran , Vered Chalifa-Caspi , Orit Shmueli , Naomi Rosen , Hila Benjamin-Rodrig , Ron Ophir , Itai Yanai , Michael Shmoish , Doron Lancet The GeneCardsTM Family of Databases: GeneCards, GeneLoc, GeneNote and GeneAnnot. [Citation Graph (0, 0)][DBLP ] Conf ] Taku A. Tokuyasu , Donna Albertson , Dan Pinkel , Ajay N. Jain Wavelet Transforms for the Analysis of Microarray Experiments. [Citation Graph (0, 0)][DBLP ] Conf ] Bill Martin , Robert M. Horton MageBuilder: A Schema Translation Tool for Generating MAGE-ML from Tabular Microarray Data. [Citation Graph (0, 0)][DBLP ] Conf ] Wenwu Cui , Jianchang Ning , Ulhas P. Naik , Melinda K. Duncan OptiRNai, a Web-based Program to Select siRNA Sequences. [Citation Graph (0, 0)][DBLP ] Conf ] Bartosz Wilczynski , Torgeir R. Hvidsten , Andriy Kryshtafovych , Lisa Stubbs , Henryk Jan Komorowski , Krzysztof Fidelis A rule-based framework for gene regulation pathways discovery. [Citation Graph (0, 0)][DBLP ] Conf ] Qing Dong , Rama Balakrishnan , Gail Binkley , Karen R. Christie , Maria C. Costanzo , Kara Dolinski , Selina S. Dwight , Stacia R. Engel , Dianna G. Fisk , Jodi E. Hirschman , Eurie L. Hong , Robert S. Nash , Laurie Issel-Tarver , Anand Sethuraman , Chandra L. Theesfeld , Shuai Weng , David Botstein , J. Michael Cherry Gene Function, Metabolic Pathways and Comparative Genomics in Yeast. [Citation Graph (0, 0)][DBLP ] Conf ] Gary Livingston , Xiao Li , Guangyi Li , Liwu Hao , Jiangping Zhou Using Rule Induction Methods to Analyze Gene Expression Data. [Citation Graph (0, 0)][DBLP ] Conf ] Sailu Yellaboina , Prachee Chakhaiyar , Seyed Ehetsham Hasnain , Akash Ranjan Computational prediction of DtxR regulon-A Dissection of physiological process controlled by DtxR in Corynebacterium species. [Citation Graph (0, 0)][DBLP ] Conf ] Shaun Mahony , Terry J. Smith , James O. McInerney , Aaron Golden A New Approach to Gene Prediction Using the Self-Organizing Map. [Citation Graph (0, 0)][DBLP ] Conf ] Rong Chen , Hesham H. Ali On Gene Prediction by Cross-Species Comparative Sequence Analysis. [Citation Graph (0, 0)][DBLP ] Conf ] Victor Olman , Dong Xu , Ying Xu CUBIC: Identification of Regulatory Binding Sites Through Data Clustering. [Citation Graph (0, 0)][DBLP ] Conf ] Yoko Higashi , Hirotaka Higuchi , Takashi Kido , Hirohito Matsumine , Masanori Baba , Toshihiko Morimoto , Masaaki Muramatsu SNP Analysis System for Detecting Complex Disease Associated Sites. [Citation Graph (0, 0)][DBLP ] Conf ] Takashi Kido , Masanori Baba , Hirohito Matsumine , Yoko Higashi , Hirotaka Higuchi , Masaaki Muramatsu Haplotype Pattern Mining & Classification for detecting disease associated Site. [Citation Graph (0, 0)][DBLP ] Conf ] Seung Yup Lee , Yoshimi Fujitsuka , Shoji Takada , Do Hyun Kim What makes IgG binding domain of protein L fold up to native state: a simulation study with physical oriented energy functions coupled to topology induced terms. [Citation Graph (0, 0)][DBLP ] Conf ] Igor Tsukerman New Computational Methods for Electrostatics in Macromolecular Simulation. [Citation Graph (0, 0)][DBLP ] Conf ] Chengpeng Bi , Craig J. Benham The Approximate Algorithm for Analysis of the Strand Separation Transition in Super helical DNA Using Nearest Neighbor Energetics. [Citation Graph (0, 0)][DBLP ] Conf ] Kaori Ueno-Noto , Keiko Takano , Miki Hara-Yokoyama Substrate Recognition by Enzymes: a Theoretical Study. [Citation Graph (0, 0)][DBLP ] Conf ] Peter M. Kasson , Vijay S. Pande Computational Simulation of Lipid Bilayer Reorientation at Gaps. [Citation Graph (0, 0)][DBLP ] Conf ] Liaofu Luo , Li-Ching Hsieh , Fengmin Ji , Mengwen Jia , H. C. Lee Search for Evolution-Related-Oligonucleotides and Conservative Words in rRNA Sequences. [Citation Graph (0, 0)][DBLP ] Conf ] Terrence S. T. Mak , K. P. Lam High Speed GAML-based Phylogenetic Tree Reconstruction Using HW/SW Codesign. [Citation Graph (0, 0)][DBLP ] Conf ] Li-Ching Hsieh , Liaofu Luo , H. C. Lee Evidence for Growth of Microbial Genomes by Short Segmental Duplications. [Citation Graph (0, 0)][DBLP ] Conf ] Chen Yang , Sami Khuri PTC: An Interactive Tool for Phylogenetic Tree Construction. [Citation Graph (0, 0)][DBLP ] Conf ] Sören W. Perrey , Heinrich Brinck , Achim Zielesny Iterative Rank based Methods for Clustering. [Citation Graph (0, 0)][DBLP ] Conf ] Ghislain Bidaut , Karsten Suhre , Jean-Michel Claverie , Michael F. Ochs Analysis of Phylogenetic Profiles Using Bayesian Decomposition. [Citation Graph (0, 0)][DBLP ] Conf ] Yunfeng Shan , Evangelos E. Milios , Andrew J. Roger , Christian Blouin , Edward Susko Automatic Recognition of Regions of Intrinsically Poor Multiple Alignment Using Machine Learning. [Citation Graph (0, 0)][DBLP ] Conf ] Jun Huan , Jan Prins , Wei Wang , Todd J. Vision Reconstruction of Ancestral Gene Order after Segmental Duplication and Gene Loss. [Citation Graph (0, 0)][DBLP ] Conf ] Yuhong Wang , John P. Rose , Bi-Cheng Wang , Dawei Lin Reconstruction of Ancient Operons From Complete Microbial Genome Sequences. [Citation Graph (0, 0)][DBLP ] Conf ] Hsiang Chi Huang An Evolutionary Approach to Finding Schemas for 3-Class Protein Secondary Structure Prediction. [Citation Graph (0, 0)][DBLP ] Conf ] Dechang Chen , Dong Hua , Jaques Reifman , Xiuzhen Cheng Gene Selection for Multi-Class Prediction of Microarray Data. [Citation Graph (0, 0)][DBLP ] Conf ] Dong Hua , Dechang Chen , Xiuzhen Cheng , Abdou Youssef Latent Structure Models for the Analysis of Gene Expression Data. [Citation Graph (0, 0)][DBLP ] Conf ] Yoshiharu Hayashi , Katsuyoshi Sakaguchi , Nao Iwata , Masaki Kobayashi Molecular Evaluation using Comparative Molecular Interaction Profile Analysis system. [Citation Graph (0, 0)][DBLP ] Conf ] Vincent Van Buren , Toshiyuki Yoshikawa , Toshio Hamatani , Minoru S. H. Ko Probe Design for Large-Scale Molecular Biology Applications. [Citation Graph (0, 0)][DBLP ] Conf ] Xue-wen Chen Gene Selection for Cancer Classification Using Bootstrapped Genetic Algorithms and Support Vector Machines. [Citation Graph (0, 0)][DBLP ] Conf ] I-Jeng Wang , Christopher P. Diehl , Fernando J. Pineda A Statistical Model of Proteolytic Digestion. [Citation Graph (0, 0)][DBLP ] Conf ] Jianchang Ning , Charles N. Moore , J. Clare Nelson Preliminary Wavelet Analysis of Genomic Sequences. [Citation Graph (0, 0)][DBLP ] Conf ] Vojislav Stojkovic , Grace Steele , William Lupton Using Easel for Modeling and Simulating the Interactions of Cells in Order to Better Understand the Basics of Biological Processes and to Predict Their Likely Behaviors. [Citation Graph (0, 0)][DBLP ] Conf ] Andriy Kryshtafovych , Torgeir R. Hvidsten , Henryk Jan Komorowski , Krzysztof Fidelis Fold Recognition Using Sequence Fingerprints of Protein Local Substructures. [Citation Graph (0, 0)][DBLP ] Conf ] Jianhua Ruan , Gary D. Stormo , Weixiong Zhang An Iterative Loop Matching Approach to the Prediction of RNA Secondary Stru. [Citation Graph (0, 0)][DBLP ] Conf ] Hirotoshi Taira , Tomonori Izumitani , Eisaku Maeda , Takeshi Suzuki A New Method for Predicting RNA Secondary Structure. [Citation Graph (0, 0)][DBLP ] Conf ] Chris H. Q. Ding , Hanchuan Peng Minimum Redundancy Feature Selection from Microarray Gene Expression Data. [Citation Graph (0, 0)][DBLP ] Conf ] Jianping Zhou , Gary Livingston , Georges G. Grinstein Automatic Parameter Selection for Sequence Similarity Search. [Citation Graph (0, 0)][DBLP ] Conf ] Fern Y. Hunt , Anthony J. Kearsley , Agnes O'Gallagher A Linear Programming Based Algorithm for Multiple Sequence Alignments. [Citation Graph (0, 0)][DBLP ] Conf ] Tuan Pham Alignment-Free Sequence Comparison with Vector Quantization and Hidden Markov Models. [Citation Graph (0, 0)][DBLP ] Conf ] Krishna Gopalakrishnan , Kayvan Najarian Prediction of Protein Function Using Signal Processing of Biochemical Properties. [Citation Graph (0, 0)][DBLP ] Conf ] Shih-Chieh Su , Chia H. Yeh , C. C. Jay Kuo Genomic Sequence Analysis Using Gap Sequences and Pattern Filtering. [Citation Graph (0, 0)][DBLP ] Conf ] Wojciech Szpankowski , Wenhui Ren , Lukasz Szpankowski An Optimal DNA Segmentation Based on the MDL Principle. [Citation Graph (0, 0)][DBLP ] Conf ] Carl E. McMillin , Robert M. Horton The Cybertory Sequence File System for Managing Large DNA Sequences. [Citation Graph (0, 0)][DBLP ] Conf ] Weirong Zhu , Yanwei Niu , Jizhu Lu , Guang R. Gao Implementing Parallel Hmm-pfam on the EARTH Multithreaded Architecture. [Citation Graph (0, 0)][DBLP ] Conf ] Tamer Kahveci , Ambuj K. Singh Genome on Demand: Interactive Substring Searching. [Citation Graph (0, 0)][DBLP ] Conf ] Hong Sun , Ozgur Ozturk , Hakan Ferhatosmanoglu CoMRI: A Compressed Multi-Resolution Index Structure for Sequence Similarity Queries. [Citation Graph (0, 0)][DBLP ] Conf ] Holger Mauch , Michael J. Melzer , John S. Hu Genetic Algorithm Approach for the Closest String Problem. [Citation Graph (0, 0)][DBLP ] Conf ] Youlian Pan , Fazel Famili GenericBioMatch: A novel generic pattern match algorithm for biological sequences. [Citation Graph (0, 0)][DBLP ] Conf ] F. R. Hsu , J. F. Chen Aligning ESTs to Genome Using Multi-Layer Unique Makers. [Citation Graph (0, 0)][DBLP ] Conf ] Suchendra M. Bhandarkar , Jinling Huang , Jonathan Arnold A Parallel Genetic Algorithm for Physical Mapping of Chromosomes. [Citation Graph (0, 0)][DBLP ] Conf ] Xiaolu Huang , Hesham H. Ali RCIS: A Common Interval Searching Algorithm for Amino Acid Sequences. [Citation Graph (0, 0)][DBLP ] Conf ] Mehmet Koyutürk , Ananth Grama , Wojciech Szpankowski Algorithms for Bounded-Error Correlation of High Dimensional Data in Microarray Experiments. [Citation Graph (0, 0)][DBLP ] Conf ] Yimin Jing , Sami Khuri Exact and Heuristic Algorithms for the DNA Fragment Assembly Problem. [Citation Graph (0, 0)][DBLP ] Conf ] Ezekiel F. Adebiyi , Tinuke Dipe Finding Higher Order Motifs under the Levenshtein Measure. [Citation Graph (0, 0)][DBLP ] Conf ] Brendan Mumey , Thomas Angel , Bonnie Kirkpatrick , Brian W. Bailey , P. Hargrave , Algirdas J. Jesaitis , Edward A. Dratz Mapping Discontinuous Antibody Epitopes to Reveal Protein Structure and Changes in Structure Related to Function. [Citation Graph (0, 0)][DBLP ] Conf ] Donald A. Adjeroh , Jianan Feng The SCP and Compressed Domain Analysis of Biological Sequences. [Citation Graph (0, 0)][DBLP ] Conf ] Cun-Quan Zhang , Yunkai Liu , Elaine M. Eschen , Keqiang Wu Identifying Regulatory Signals in DNA-Sequences with a Non-statistical Approximation Approach. [Citation Graph (0, 0)][DBLP ] Conf ] Matthew Palensky , Hesham H. Ali A Genetic Algorithm for Simplifying The Amino Acid Alphabet. [Citation Graph (0, 0)][DBLP ] Conf ] Danny Barash Spectral Decomposition of the Laplacian Matrix Applied to RNA Folding Prediction. [Citation Graph (0, 0)][DBLP ] Conf ] Igor B. Kuznetsov , Shelly Rackovsky Identification of Non-Random Patterns in Structural and Mutational Data: the Case of Prion Protein. [Citation Graph (0, 0)][DBLP ] Conf ] Luonan Chen Multiple Protein Structure Alignment by Deterministic Annealing. [Citation Graph (0, 0)][DBLP ] Conf ] Lincong Wang , Ramgopal R. Mettu , Ryan H. Lilien , Bruce Randall Donald An Exact Algorithm For Determining Protein Backbone Structure From NH Residual Dipolar Couplings. [Citation Graph (0, 0)][DBLP ] Conf ] Mike P. Liang , Douglas L. Brutlag , Russ B. Altman Automatic Construction of 3D Structural Motifs for Protein Function Prediction. [Citation Graph (0, 0)][DBLP ] Conf ] Eugene Santos Jr. , Keum Joo Kim , Eunice E. Santos Local Minima-Based Exploration for Off-Lattice Protein Folding. [Citation Graph (0, 0)][DBLP ] Conf ] Carolyn L. Talcott , Steven Eker , Merrill Knapp , Patrick Lincoln , Keith Laderoute Pathway Logic Modeling of Protein Functional Domains in Signal Transduction. [Citation Graph (0, 0)][DBLP ] Conf ] Richard L. Schiek , Elebeoba E. May Development of a Massively-Parallel, Biological Circuit Simulator. [Citation Graph (0, 0)][DBLP ] Conf ] Chitta Baral , Karen Chancellor , Nam Tran , Nhan Tran Representing and reasoning about signal networks: an illustration using NF\kappaB dependent signaling pathways. [Citation Graph (0, 0)][DBLP ] Conf ] Yoshihiro Morishita , Kazuyuki Aihara Noise-Attenuation in Artificial Genetic Networks. [Citation Graph (0, 0)][DBLP ] Conf ] Zhengchang Su , PhuongAn Dam , X. Chen , Victor Olman , Tao Jiang , B. Palenik , Ying Xu Computational Inference of Regulatory Pathways in Microbes. [Citation Graph (0, 0)][DBLP ] Conf ] Steve Racunas , Nigam Shah , Nina V. Fedoroff A Contradiction-Based Framework for Testing Gene Regulation Hypotheses. [Citation Graph (0, 0)][DBLP ] Conf ] Weijian Xuan , Stanley J. Watson , Huda Akil , Fan Meng Identifying Gene and Protein Names from Biological Texts. [Citation Graph (0, 0)][DBLP ] Conf ] Rachel Harte , Yan Lu , Stephen Osborn , David Dehoney , Daniel Chin Refining the Extraction of Relevant Documents from Biomedical Literature to Create a Corpus for Pathway Text Mining. [Citation Graph (0, 0)][DBLP ] Conf ] David Dehoney , Rachel Harte , Yan Lu , Daniel Chin Using Natural Language Processing and the Gene Ontology to Populate a Structured Pathway Database. [Citation Graph (0, 0)][DBLP ] Conf ] Andrea Elaina Grimes , Robert P. Futrelle Text Pattern Visualization for analysis of biology full text and captions. [Citation Graph (0, 0)][DBLP ] Conf ] Melanie A. Sutton , Lori Deneke , John Eme , Wayne Bennett , Frank Wray Development and Assessment of Bioinformatics Tools for Species Conservation and Habitat Management. [Citation Graph (0, 0)][DBLP ] Conf ] Joseph Gerrein , Armen Kherlopian , Vezen Wu , Mitchell Berman , Alvin Wald MedfoLink: Bridging the Gap between IT and the Medical Community. [Citation Graph (0, 0)][DBLP ] Conf ] Can V. Tran , Nelson M. Yang , Milton H. Saier Jr. TC-DB: An Architecture for Membrane Transport Protein Analysis. [Citation Graph (0, 0)][DBLP ] Conf ] 